Detailed information of SNP:
|
SNP ID:
sf0522056169(Gbrowse)
Chromosome: chr05 Position: 22056169 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 96.20% | 3.80% |
| All Indica | 784 | 99.36% | 0.64% |
| All Japonica | 465 | 90.32% | 9.68% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 99.03% | 0.97% |
| Temperate Japonica | 303 | 86.47% | 13.53% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522056169 | T->A | INTERGENIC | None |