Detailed information of SNP:
|
SNP ID:
sf0522075251(Gbrowse)
Chromosome: chr05 Position: 22075251 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1282 | 98.67% | 1.33% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 373 | 95.44% | 4.56% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 257 | 94.16% | 5.84% |
| Tropical Japonica | 66 | 100.00% | 0.00% |
| Japonica Intermediate | 50 | 96.00% | 4.00% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522075251 | G->T | INTERGENIC | None |