Detailed information of SNP:
|
SNP ID:
sf0522207416(Gbrowse)
Chromosome: chr05 Position: 22207416 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 90.66% | 9.34% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 376 | 71.81% | 28.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 259 | 66.80% | 33.20% |
| Tropical Japonica | 67 | 92.54% | 7.46% |
| Japonica Intermediate | 50 | 70.00% | 30.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522207416 | T->A | INTERGENIC | None |