Detailed information of SNP:
|
SNP ID:
sf0522210153(Gbrowse)
Chromosome: chr05 Position: 22210153 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 61.52% | 38.48% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 481 | 0.62% | 99.38% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 324 | 0.31% | 99.69% |
| Tropical Japonica | 90 | 1.11% | 98.89% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522210153 | C->T | LOC_Os05g37960(LOC_Os05g37960.1) | INTRON |