Detailed information of SNP:
|
SNP ID:
sf0522231214(Gbrowse)
Chromosome: chr05 Position: 22231214 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.21% | 34.79% |
| All Indica | 798 | 39.72% | 60.28% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 28.27% | 71.73% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522231214 | G->A | LOC_Os05g38000(LOC_Os05g38000.2) | Synonymous |
| sf0522231214 | G->A | LOC_Os05g38000(LOC_Os05g38000.1) | Synonymous |