Detailed information of SNP:
|
SNP ID:
sf0522244611(Gbrowse)
Chromosome: chr05 Position: 22244611 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 94.66% | 5.34% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 483 | 84.68% | 15.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 81.40% | 18.60% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522244611 | C->G | INTERGENIC | None |