Detailed information of SNP:
|
SNP ID:
sf0522294815(Gbrowse)
Chromosome: chr05 Position: 22294815 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 66.09% | 33.91% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 463 | 6.48% | 93.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 309 | 8.41% | 91.59% |
| Tropical Japonica | 90 | 2.22% | 97.78% |
| Japonica Intermediate | 64 | 3.12% | 96.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522294815 | T->C | LOC_Os05g38120(LOC_Os05g38120.1) | INTRON |