Detailed information of SNP:
|
SNP ID:
sf0522321107(Gbrowse)
Chromosome: chr05 Position: 22321107 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.49% | 46.51% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522321107 | C->T | INTERGENIC | None |