Detailed information of SNP:
|
SNP ID:
sf0522480264(Gbrowse)
Chromosome: chr05 Position: 22480264 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.48% | 48.52% |
| All Indica | 798 | 79.70% | 20.30% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 64.27% | 35.73% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522480264 | T->C | INTERGENIC | None |