Detailed information of SNP:
|
SNP ID:
sf0522488713(Gbrowse)
Chromosome: chr05 Position: 22488713 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 61.70% | 38.30% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 492 | 0.81% | 99.19% |
| Aus | 46 | 82.61% | 17.39% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522488713 | C->T | INTERGENIC | None |