Detailed information of SNP:



SNP ID: sf0522500695(Gbrowse)

Chromosome: chr05

Position: 22500695
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1416 89.83% 10.17%
All Indica796 82.54% 17.46%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I372 66.94% 33.06%
Indica II213 99.06% 0.94%
Indica Intermediate211 93.36% 6.64%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0522500695 T->C INTERGENIC None