Detailed information of SNP:
|
SNP ID:
sf0522516919(Gbrowse)
Chromosome: chr05 Position: 22516919 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 92.61% | 7.39% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 445 | 78.43% | 21.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 304 | 93.09% | 6.91% |
| Tropical Japonica | 80 | 30.00% | 70.00% |
| Japonica Intermediate | 61 | 68.85% | 31.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522516919 | G->T | INTERGENIC | None |