Detailed information of SNP:
|
SNP ID:
sf0522654046(Gbrowse)
Chromosome: chr05 Position: 22654046 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 87.69% | 12.31% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 489 | 65.44% | 34.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 55.29% | 44.71% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522654046 | A->G | INTERGENIC | None |