Detailed information of SNP:
|
SNP ID:
sf0522689507(Gbrowse)
Chromosome: chr05 Position: 22689507 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 98.10% | 1.90% |
| All Indica | 748 | 97.59% | 2.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 341 | 98.53% | 1.47% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 198 | 96.97% | 3.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522689507 | A->G | LOC_Os05g38780(LOC_Os05g38780.1) | INTRON |