Detailed information of SNP:
|
SNP ID:
sf0522739919(Gbrowse)
Chromosome: chr05 Position: 22739919 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.91% | 41.09% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522739919 | T->C | INTERGENIC | None |