Detailed information of SNP:
|
SNP ID:
sf0522779036(Gbrowse)
Chromosome: chr05 Position: 22779036 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1165 | 93.91% | 6.09% |
| All Indica | 735 | 93.74% | 6.26% |
| All Japonica | 313 | 92.01% | 7.99% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 334 | 93.41% | 6.59% |
| Indica II | 201 | 97.01% | 2.99% |
| Indica Intermediate | 200 | 91.00% | 9.00% |
| Temperate Japonica | 194 | 89.18% | 10.82% |
| Tropical Japonica | 69 | 100.00% | 0.00% |
| Japonica Intermediate | 50 | 92.00% | 8.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522779036 | A->C | LOC_Os05g38950(LOC_Os05g38950.1) | INTRON |
| sf0522779036 | A->C | LOC_Os05g38950(LOC_Os05g38950.2) | INTRON |