Detailed information of SNP:
|
SNP ID:
sf0522807196(Gbrowse)
Chromosome: chr05 Position: 22807196 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1314 | 96.96% | 3.04% |
| All Indica | 705 | 94.33% | 5.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 315 | 96.19% | 3.81% |
| Indica II | 195 | 89.74% | 10.26% |
| Indica Intermediate | 195 | 95.90% | 4.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522807196 | G->A | INTERGENIC | None |