Detailed information of SNP:
|
SNP ID:
sf0522822330(Gbrowse)
Chromosome: chr05 Position: 22822330 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 96.59% | 3.41% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 60 | 78.33% | 21.67% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522822330 | G->A | LOC_Os05g39010(LOC_Os05g39010.1) | Non-Synonymous SNP |