Detailed information of SNP:
|
SNP ID:
sf0522828533(Gbrowse)
Chromosome: chr05 Position: 22828533 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 95.39% | 4.61% |
| All Indica | 771 | 93.13% | 6.87% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 362 | 93.37% | 6.63% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 202 | 93.56% | 6.44% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522828533 | T->G | INTERGENIC | None |