Detailed information of SNP:
|
SNP ID:
sf0522952131(Gbrowse)
Chromosome: chr05 Position: 22952131 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 61.43% | 38.57% |
| All Indica | 782 | 96.42% | 3.58% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 364 | 96.70% | 3.30% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522952131 | T->C | INTERGENIC | None |