Detailed information of SNP:
|
SNP ID:
sf0522973613(Gbrowse)
Chromosome: chr05 Position: 22973613 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 62.32% | 37.68% |
| All Indica | 792 | 96.72% | 3.28% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522973613 | T->C | LOC_Os05g39280(LOC_Os05g39280.1) | INTRON |