Detailed information of SNP:
|
SNP ID:
sf0522991798(Gbrowse)
Chromosome: chr05 Position: 22991798 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 56.58% | 43.42% |
| All Indica | 788 | 92.77% | 7.23% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 206 | 93.20% | 6.80% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0522991798 | G->A | INTERGENIC | None |