Detailed information of SNP:
SNP ID:
sf0523035554(Gbrowse)
Chromosome: chr05 Position: 23035554 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 60.23% | 39.77% |
All Indica | 799 | 99.12% | 0.88% |
All Japonica | 497 | 0.60% | 99.40% |
Aus | 67 | 53.73% | 46.27% |
Indica I | 375 | 99.47% | 0.53% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 94 | 3.19% | 96.81% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0523035554 | C->T | INTERGENIC | None |