Detailed information of SNP:
|
SNP ID:
sf0523051185(Gbrowse)
Chromosome: chr05 Position: 23051185 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 70.62% | 29.38% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 459 | 14.16% | 85.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 305 | 19.67% | 80.33% |
| Tropical Japonica | 89 | 3.37% | 96.63% |
| Japonica Intermediate | 65 | 3.08% | 96.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523051185 | A->G | LOC_Os05g39410(LOC_Os05g39410.1) | Non-Synonymous SNP |
| sf0523051185 | A->G | LOC_Os05g39410(LOC_Os05g39410.3) | Non-Synonymous SNP |
| sf0523051185 | A->G | LOC_Os05g39410(LOC_Os05g39410.2) | Non-Synonymous SNP |