Detailed information of SNP:
|
SNP ID:
sf0523052243(Gbrowse)
Chromosome: chr05 Position: 23052243 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 75.17% | 24.83% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 424 | 23.58% | 76.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 290 | 31.72% | 68.28% |
| Tropical Japonica | 76 | 3.95% | 96.05% |
| Japonica Intermediate | 58 | 8.62% | 91.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523052243 | A->G | LOC_Os05g39410(LOC_Os05g39410.1) | Synonymous |
| sf0523052243 | A->G | LOC_Os05g39410(LOC_Os05g39410.3) | Synonymous |
| sf0523052243 | A->G | LOC_Os05g39410(LOC_Os05g39410.2) | Synonymous |