Detailed information of SNP:
|
SNP ID:
sf0523068836(Gbrowse)
Chromosome: chr05 Position: 23068836 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 52.61% | 47.39% |
| All Indica | 692 | 91.62% | 8.38% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 60 | 46.67% | 53.33% |
| Indica I | 315 | 89.84% | 10.16% |
| Indica II | 198 | 94.95% | 5.05% |
| Indica Intermediate | 179 | 91.06% | 8.94% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523068836 | C->T | INTERGENIC | None |