Detailed information of SNP:



SNP ID: sf0523128533(Gbrowse)

Chromosome: chr05

Position: 23128533
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1415 86.71% 13.29%
All Indica795 77.74% 22.26%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I373 75.87% 24.13%
Indica II211 84.83% 15.17%
Indica Intermediate211 73.93% 26.07%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0523128533 T->G LOC_Os05g39520(LOC_Os05g39520.1) Non-Synonymous SNP