Detailed information of SNP:
|
SNP ID:
sf0523147129(Gbrowse)
Chromosome: chr05 Position: 23147129 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 54.79% | 45.21% |
| All Indica | 791 | 26.55% | 73.45% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 372 | 23.66% | 76.34% |
| Indica II | 212 | 28.30% | 71.70% |
| Indica Intermediate | 207 | 29.95% | 70.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523147129 | G->A | LOC_Os05g39540(LOC_Os05g39540.1) | INTRON |
| sf0523147129 | G->A | LOC_Os05g39540(LOC_Os05g39540.2) | UTR_3_PRIME |