Detailed information of SNP:
|
SNP ID:
sf0523166697(Gbrowse)
Chromosome: chr05 Position: 23166697 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 97.49% | 2.51% |
| All Indica | 778 | 97.69% | 2.31% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 198 | 97.98% | 2.02% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523166697 | G->A | INTERGENIC | None |