Detailed information of SNP:
|
SNP ID:
sf0523173387(Gbrowse)
Chromosome: chr05 Position: 23173387 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.56% | 49.44% |
| All Indica | 798 | 76.69% | 23.31% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 75.40% | 24.60% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523173387 | G->A | INTERGENIC | None |