Detailed information of SNP:
|
SNP ID:
sf0523202490(Gbrowse)
Chromosome: chr05 Position: 23202490 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 59.33% | 40.67% |
| All Indica | 786 | 92.49% | 7.51% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 366 | 90.71% | 9.29% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523202490 | G->A | LOC_Os05g39620(LOC_Os05g39620.1) | Synonymous |