Detailed information of SNP:
|
SNP ID:
sf0523203655(Gbrowse)
Chromosome: chr05 Position: 23203655 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 63.39% | 36.61% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 466 | 3.86% | 96.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 317 | 2.84% | 97.16% |
| Tropical Japonica | 85 | 7.06% | 92.94% |
| Japonica Intermediate | 64 | 4.69% | 95.31% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523203655 | A->G | LOC_Os05g39620(LOC_Os05g39620.1) | Non-Synonymous SNP |