Detailed information of SNP:
|
SNP ID:
sf0523240147(Gbrowse)
Chromosome: chr05 Position: 23240147 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1316 | 95.44% | 4.56% |
| All Indica | 769 | 100.00% | 0.00% |
| All Japonica | 427 | 86.42% | 13.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 295 | 98.31% | 1.69% |
| Tropical Japonica | 77 | 55.84% | 44.16% |
| Japonica Intermediate | 55 | 65.45% | 34.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523240147 | G->A | INTERGENIC | None |