Detailed information of SNP:
|
SNP ID:
sf0523246343(Gbrowse)
Chromosome: chr05 Position: 23246343 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 51.89% | 48.11% |
| All Indica | 781 | 79.13% | 20.87% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 66.31% | 33.69% |
| Indica II | 200 | 91.00% | 9.00% |
| Indica Intermediate | 207 | 90.82% | 9.18% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523246343 | T->C | INTERGENIC | None |