Detailed information of SNP:



SNP ID: sf0523356925(Gbrowse)

Chromosome: chr05

Position: 23356925
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 96.34% 3.66%
All Indica799 100.00% 0.00%
All Japonica497 100.00% 0.00%
Aus67 46.27% 53.73%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 14.29% 85.71%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0523356925 C->T INTERGENIC None