Detailed information of SNP:
|
SNP ID:
sf0523392517(Gbrowse)
Chromosome: chr05 Position: 23392517 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.74% | 41.26% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523392517 | C->T | LOC_Os05g39920(LOC_Os05g39920.1) | INTRON |