Detailed information of SNP:
|
SNP ID:
sf0523447019(Gbrowse)
Chromosome: chr05 Position: 23447019 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 95.63% | 4.37% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523447019 | C->A | LOC_Os05g40010(LOC_Os05g40010.1) | UTR_3_PRIME |