Detailed information of SNP:
|
SNP ID:
sf0523461827(Gbrowse)
Chromosome: chr05 Position: 23461827 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 91.10% | 8.90% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 494 | 77.53% | 22.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 92 | 16.30% | 83.70% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523461827 | C->T | LOC_Os05g40050(LOC_Os05g40050.2) | Non-Synonymous SNP |
| sf0523461827 | C->T | LOC_Os05g40050(LOC_Os05g40050.1) | Non-Synonymous SNP |