Detailed information of SNP:
|
SNP ID:
sf0523480334(Gbrowse)
Chromosome: chr05 Position: 23480334 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1282 | 80.27% | 19.73% |
| All Indica | 667 | 64.77% | 35.23% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 297 | 63.30% | 36.70% |
| Indica II | 186 | 58.06% | 41.94% |
| Indica Intermediate | 184 | 73.91% | 26.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523480334 | C->T | INTERGENIC | None |