Detailed information of SNP:
|
SNP ID:
sf0523480994(Gbrowse)
Chromosome: chr05 Position: 23480994 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 94.89% | 5.11% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 486 | 87.65% | 12.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 88 | 56.82% | 43.18% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523480994 | T->C | INTERGENIC | None |