Detailed information of SNP:
|
SNP ID:
sf0523509307(Gbrowse)
Chromosome: chr05 Position: 23509307 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 53.41% | 46.59% |
| All Indica | 791 | 35.27% | 64.73% |
| All Japonica | 497 | 76.86% | 23.14% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 369 | 26.02% | 73.98% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 209 | 36.36% | 63.64% |
| Temperate Japonica | 335 | 67.16% | 32.84% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523509307 | T->C | LOC_Os05g40120(LOC_Os05g40120.1) | INTRON |