Detailed information of SNP:



SNP ID: sf0523509939(Gbrowse)

Chromosome: chr05

Position: 23509939
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1415 81.91% 18.09%
All Indica799 99.25% 0.75%
All Japonica493 50.51% 49.49%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 99.06% 0.94%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica332 42.77% 57.23%
Tropical Japonica93 81.72% 18.28%
Japonica Intermediate68 45.59% 54.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0523509939 G->A INTERGENIC None