Detailed information of SNP:
SNP ID:
sf0523509939(Gbrowse)
Chromosome: chr05 Position: 23509939 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1415 | 81.91% | 18.09% |
All Indica | 799 | 99.25% | 0.75% |
All Japonica | 493 | 50.51% | 49.49% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 332 | 42.77% | 57.23% |
Tropical Japonica | 93 | 81.72% | 18.28% |
Japonica Intermediate | 68 | 45.59% | 54.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0523509939 | G->A | INTERGENIC | None |