Detailed information of SNP:
|
SNP ID:
sf0523512665(Gbrowse)
Chromosome: chr05 Position: 23512665 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 91.31% | 8.69% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 497 | 76.06% | 23.94% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 67.16% | 32.84% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523512665 | C->T | LOC_Os05g40140(LOC_Os05g40140.1) | Synonymous |