Detailed information of SNP:
SNP ID:
sf0523549785(Gbrowse)
Chromosome: chr05 Position: 23549785 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1416 | 69.35% | 30.65% |
All Indica | 796 | 54.40% | 45.60% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 34.33% | 65.67% |
Indica I | 374 | 51.34% | 48.66% |
Indica II | 211 | 49.76% | 50.24% |
Indica Intermediate | 211 | 64.45% | 35.55% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0523549785 | T->C | INTERGENIC | None |