Detailed information of SNP:
|
SNP ID:
sf0523593117(Gbrowse)
Chromosome: chr05 Position: 23593117 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 96.52% | 3.48% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 45.00% | 55.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.8) | INTRON |
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.6) | INTRON |
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.1) | INTRON |
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.9) | INTRON |
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.5) | INTRON |
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.10) | INTRON |
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.4) | INTRON |
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.7) | INTRON |
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.3) | INTRON |
| sf0523593117 | C->T | LOC_Os05g40270(LOC_Os05g40270.2) | INTRON |