Detailed information of SNP:



SNP ID: sf0523673289(Gbrowse)

Chromosome: chr05

Position: 23673289
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1415 97.31% 2.69%
All Indica799 100.00% 0.00%
All Japonica497 100.00% 0.00%
Aus64 59.38% 40.62%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic13 46.15% 53.85%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0523673289 C->T LOC_Os05g40384(LOC_Os05g40384.1) INTRON