Detailed information of SNP:



SNP ID: sf0523701855(Gbrowse)

Chromosome: chr05

Position: 23701855
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1419 97.32% 2.68%
All Indica799 95.49% 4.51%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 87.32% 12.68%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0523701855 G->T INTERGENIC None