Detailed information of SNP:



SNP ID: sf0523705182(Gbrowse)

Chromosome: chr05

Position: 23705182
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1419 98.73% 1.27%
All Indica799 100.00% 0.00%
All Japonica497 96.58% 3.42%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 84.04% 15.96%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0523705182 T->A LOC_Os05g40460(LOC_Os05g40460.1) INTRON