Detailed information of SNP:
|
SNP ID:
sf0523717503(Gbrowse)
Chromosome: chr05 Position: 23717503 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 95.45% | 4.55% |
| All Indica | 788 | 99.24% | 0.76% |
| All Japonica | 495 | 88.69% | 11.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 98.64% | 1.36% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 54.35% | 45.65% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523717503 | C->T | LOC_Os05g40490(LOC_Os05g40490.1) | Synonymous |