Detailed information of SNP:
|
SNP ID:
sf0523800171(Gbrowse)
Chromosome: chr05 Position: 23800171 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.09% | 34.91% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523800171 | A->G | INTERGENIC | None |